FTL AE Weapons Ranking (Ignoring weapons that are unobtainable after the start and crystal weapons)

Halberd Beam
Flak 1
Burst Laser 2
Heavy Laser 1
Pike Beam
Charge Laser 2
Glaive Beam
Small Bomb
Ion Charger
Ion Bomb
Ion Blast 2
Flak 2
Heavy Laser 2
Breach Bomb 2
Charge Laser 1
Burst Laser 1
Chain Vulcan
Hull Beam
Hull Laser 2
Ion Blast 1
Ion Stunner
Breach Bomb 1
Hull Laser 1
Chain Burst Laser
Burst Laser 3
Breach Missile
Chain Ion
Artemis Missile
Hermes Missile
Crystal Lockdown Bomb
Anti-Bio Beam
Stun Bomb
Fire Beam
Heavy Ion
Fire Bomb
Healing Burst
Pegasus Missile
Repair Burst
Swarm Missiles
Hull Missile